1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000006.1_cds_KAA8493723.1_4485

lcl|VRMN01000006.1_cds_KAA8493723.1_4485 (KAA8493723)


Aliases : KAA8493723

Description : 40S ribosomal protein S3-A


Gene families : OG_01_0003293 (OrthoFinder) Phylogenetic Tree(s): OG0003293_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493723.1_4485
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.41 tig00021462_g21604.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 OrthoFinder
Cre02.g102250 30785015, RPS3 Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder
Cz02g33150.t1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.21 OrthoFinder
Dusal.0669s00001.1 33197930 Ribosomal protein S3, C-terminal; K Homology domain,... 0.06 OrthoFinder
EOD31013 No alias Ribosomal protein S3, C-terminal; K Homology domain,... 0.11 OrthoFinder
OT_04G01280.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.15 OrthoFinder
PTI_04G00160.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.27 OrthoFinder
Sro694_g188530.1 Contig4437.g33306 40S ribosomal protein S3 0.36 OrthoFinder
TP04G07750.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.29 OrthoFinder
Vocar.0002s0314.1 32891162 K Homology domain, type 2; Ribosomal protein S3,... 0.19 OrthoFinder
XM_002508158.1 MICPUN_91459, 91459 Ribosomal protein S3, C-terminal; K Homology domain,... 0.24 OrthoFinder
XM_003057639.1 MicpuC2_26239, 26239 K Homology domain, type 2; Ribosomal protein S3,... 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 108 190
IPR004044 KH_dom_type_2 23 96
No external refs found!