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  5. lcl|VRMN01000005.1_cds_KAA8494358.1_4222

lcl|VRMN01000005.1_cds_KAA8494358.1_4222 (KAA8494358)


Aliases : KAA8494358

Description : Retrotransposable element


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000005.1_cds_KAA8494358.1_4222
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496272.1_1 KAA8496272 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496275.1_4 KAA8496275 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497468.1_1197 KAA8497468 Reverse transcriptase domain [Interproscan]. 0.09 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497470.1_1199 KAA8497470 Hypothetical protein 0.17 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496268.1_2266 KAA8496268 Hypothetical protein 0.19 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496269.1_2267 KAA8496269 Retrotransposable element 0.12 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 KAA8496271 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 KAA8492708 Copia protein 0.15 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492711.1_9404 KAA8492711 Retrotransposable element 0.14 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492026.1_5209 KAA8492026 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492295.1_5478 KAA8492295 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 KAA8490703 Retrotransposable element 0.13 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490705.1_5961 KAA8490705 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490572.1_6045 KAA8490572 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490574.1_6047 KAA8490574 RNA-directed DNA polymerase from mobile element jockey 0.12 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 KAA8490413 Retrotransposable element 0.09 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 KAA8490408 Hypothetical protein 0.2 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490409.1_6098 KAA8490409 Reverse transcriptase domain [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490336.1_5678 KAA8490336 RNA-directed DNA polymerase from mobile element jockey 0.11 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490339.1_5681 KAA8490339 Retrotransposable element 0.19 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.13 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490257.1_2416 KAA8490257 Reverse transcriptase domain [Interproscan]. 0.16 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490258.1_2417 KAA8490258 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 KAA8490243 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490237.1_6104 KAA8490237 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490239.1_6106 KAA8490239 Hypothetical protein 0.16 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490232.1_2422 KAA8490232 Retrotransposable element 0.12 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490234.1_2424 KAA8490234 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 KAA8490227 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490219.1_4683 KAA8490219 Reverse transcriptase domain [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.05 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490214.1_5699 KAA8490214 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490210.1_4223 KAA8490210 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000049.1_cds_KAA8490206.1_5939 KAA8490206 Hypothetical protein 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 816 1010
No external refs found!