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  5. lcl|VRMN01000004.1_cds_KAA8495072.1_3602

lcl|VRMN01000004.1_cds_KAA8495072.1_3602 (KAA8495072)


Aliases : KAA8495072

Description : GTPase Der


Gene families : OG_01_0000636 (OrthoFinder) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8495072.1_3602
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.28 tig00020780_g13781.t1 No description available 0.03 OrthoFinder
Cre16.g658450 30777563 No description available 0.06 OrthoFinder
OT_11G02210.1 No alias GTPase Der, C-terminal KH-domain-like; GTP binding... 0.06 OrthoFinder
PTI_01G00520.1 No alias GTPase Der, C-terminal KH-domain-like; GTP binding... 0.02 OrthoFinder
PTI_16G00810.1 No alias GTPase Der, C-terminal KH-domain-like; GTP binding... 0.02 OrthoFinder
Sro9_g007110.1 Contig4120.g31479 GTPase Der 0.03 OrthoFinder
Transcript_contig_55811 55811 GTPase Der, C-terminal KH-domain-like; GTP binding... 0.01 OrthoFinder
Transcript_contig_59772 59772 GTP binding domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_6724 6724 GTP binding domain [Interproscan]. 0.02 OrthoFinder
XM_002509200.1 MICPUN_98167, 98167 GTP binding domain; GTPase Der, C-terminal... 0.16 OrthoFinder
XM_003061465.1 MicpuC2_44721, 44721 GTPase Der, C-terminal KH-domain-like; GTP binding... 0.09 OrthoFinder
lcl|BLLF01000856.1_cds_GFH15484.1_9961 HaLaN_11720, GFH15484 GTPase Der, C-terminal KH-domain-like; GTP binding... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR032859 KH_dom-like 456 537
IPR006073 GTP-bd 280 397
IPR006073 GTP-bd 91 212
No external refs found!