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  5. lcl|VRMN01000004.1_cds_KAA8494946.1_3476

lcl|VRMN01000004.1_cds_KAA8494946.1_3476 (KAA8494946)


Aliases : KAA8494946

Description : Multidrug resistance protein 1B


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494946.1_3476
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000293.10 tig00000572_g2208.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cre17.g725150 30782210 ABC transporter B family member 7 OS=Arabidopsis thaliana 0.01 OrthoFinder
EOD31963 No alias Putative ABC transporter [Ensembl]. 0.01 OrthoFinder
PTI_03G01030.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.03 OrthoFinder
PTI_13G02060.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Sro1916_g305200.1 Contig4310.g32500 Transporter B family member 0.02 OrthoFinder
Sro3104_g343850.1 Contig2425.g19841 Colicin V secretion/processing ATP-binding protein CvaB 0.01 OrthoFinder
SymbC1.scaffold774.4 774.4 ABC transporter-like; Domain of unknown function DUF155;... 0.01 OrthoFinder
TP12G00540.1 No alias ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Vocar.0001s1440.1 32884741 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Vocar.0028s0139.1 32895550 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
XM_003060400.1 MicpuC2_19395, 19395 ATP-binding cassette superfamily 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 123 400
IPR011527 ABC1_TM_dom 817 1086
IPR003439 ABC_transporter-like_ATP-bd 1153 1307
IPR003439 ABC_transporter-like_ATP-bd 469 639
No external refs found!