lcl|VRMN01000004.1_cds_KAA8494878.1_3408 (KAA8494878)

Aliases : KAA8494878

Description : Retrotransposon gag domain; Zinc finger, CCHC-type [Interproscan].

Gene families : OG_01_0002023 (OrthoFinder) Phylogenetic Tree(s): OG0002023_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000004.1_cds_KAA8494878.1_3408
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8499406.1_8359	KAA8499406	Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497003.1_732	KAA8497003	Copia protein	0.12	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494832.1_3362	KAA8494832	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494877.1_3407	KAA8494877	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492110.1_5293	KAA8492110	Hypothetical protein	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	212	228
IPR005162	Retrotrans_gag_dom	50	138

External Links

No external refs found!