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  5. lcl|VRMN01000004.1_cds_KAA8494625.1_3155

lcl|VRMN01000004.1_cds_KAA8494625.1_3155 (KAA8494625)


Aliases : KAA8494625

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0003607 (OrthoFinder) Phylogenetic Tree(s): OG0003607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494625.1_3155
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498188.1_7141 KAA8498188 Copia protein 0.09 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494621.1_3151 KAA8494621 Retrotransposon gag domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494623.1_3153 KAA8494623 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493470.1_4232 KAA8493470 Retrotransposon gag domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493660.1_4422 KAA8493660 Copia protein 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491336.1_2337 KAA8491336 Copia protein 0.1 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491362.1_2363 KAA8491362 Copia protein 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491363.1_2364 KAA8491363 Retrotransposon gag domain [Interproscan]. 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 43 176
No external refs found!