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  5. lcl|VRMN01000004.1_cds_KAA8494615.1_3145

lcl|VRMN01000004.1_cds_KAA8494615.1_3145 (KAA8494615)


Aliases : KAA8494615

Description : ABC transporter D family member 2, chloroplastic


Gene families : OG_01_0000221 (OrthoFinder) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494615.1_3145
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_58953 58953 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEP Enrichment
CC GO:0031011 Ino80 complex IEP Enrichment
CC GO:0033202 DNA helicase complex IEP Enrichment
CC GO:0070603 SWI/SNF superfamily-type complex IEP Enrichment
CC GO:0097346 INO80-type complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 457 607
IPR011527 ABC1_TM_dom 75 334
No external refs found!