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  5. lcl|VRMN01000003.1_cds_KAA8496235.1_2233

lcl|VRMN01000003.1_cds_KAA8496235.1_2233 (KAA8496235)


Aliases : KAA8496235

Description : DNA-directed RNA polymerase III subunit RPC2


Gene families : OG_01_0002526 (OrthoFinder) Phylogenetic Tree(s): OG0002526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8496235.1_2233
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cz07g31260.t1 No alias RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2,... 0.02 OrthoFinder
OT_01G06160.1 No alias RNA polymerase Rpb2, domain 7; DNA-directed RNA... 0.03 OrthoFinder
Sro308_g113620.1 Contig2352.g19332 Polymerase II subunit RPB2 0.02 OrthoFinder
TP01G04670.1 No alias RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2,... 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61366.1_247 PRW61366 DNA-directed RNA polymerase subunit 2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 1164 1248
IPR007645 RNA_pol_Rpb2_3 534 598
IPR007644 RNA_pol_bsu_protrusion 129 491
IPR007120 DNA-dir_RNAP_su2_dom 972 1162
IPR007120 DNA-dir_RNAP_su2_dom 764 929
IPR007642 RNA_pol_Rpb2_2 276 458
IPR007646 RNA_pol_Rpb2_4 635 695
IPR007647 RNA_pol_Rpb2_5 717 757
No external refs found!