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  5. lcl|VRMN01000003.1_cds_KAA8496122.1_2120

lcl|VRMN01000003.1_cds_KAA8496122.1_2120 (KAA8496122)


Aliases : KAA8496122

Description : Transposable element Tc3 transposase


Gene families : OG_01_0003235 (OrthoFinder) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8496122.1_2120
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497595.1_6548 KAA8497595 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499722.1_8675 KAA8499722 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494363.1_2893 KAA8494363 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495201.1_3731 KAA8495201 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491638.1_5106 KAA8491638 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491651.1_5119 KAA8491651 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491423.1_6233 KAA8491423 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490931.1_6134 KAA8490931 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490417.1_5040 KAA8490417 Transposable element Tc3 transposase 0.14 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 40 158
No external refs found!