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  5. lcl|VRMN01000003.1_cds_KAA8495830.1_1828

lcl|VRMN01000003.1_cds_KAA8495830.1_1828 (KAA8495830)


Aliases : KAA8495830

Description : Putative E3 ubiquitin-protein ligase RHC1A


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495830.1_1828
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000571.7 tig00000571_g2158.t1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder
Cpa|evm.model.tig00000842.16 tig00000842_g4836.t1 No description available 0.02 OrthoFinder
Dusal.0556s00001.1 33195346 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
EOD07947 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
EOD36873 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_01G05830.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
PTI_22G02070.1 No alias Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
Sro117_g057280.1 Contig3937.g30172 Protein ligase Arkadia 0.02 OrthoFinder
SymbC1.scaffold328.13 328.13 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold449.5 449.5 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
TP02G01130.1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
XM_003062145.1 MicpuC2_9885, 9885 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497115.1_844 KAA8497115 E3 ubiquitin-protein ligase RNF38 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492975.1_2711 KAA8492975 E3 ubiquitin protein ligase RIE1 0.04 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492115.1_5298 KAA8492115 E3 ubiquitin-protein ligase SDIR1 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004057 arginyltransferase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016598 protein arginylation IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 263 305
No external refs found!