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  5. lcl|VRMN01000003.1_cds_KAA8495307.1_1305

lcl|VRMN01000003.1_cds_KAA8495307.1_1305 (KAA8495307)


Aliases : KAA8495307

Description : Replication factor A protein 1


Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495307.1_1305
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000823.18 tig00000823_g4546.t1 Replication protein A 70 kDa DNA-binding subunit E... 0.04 OrthoFinder
Cre16.g651000 30777595 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.05 OrthoFinder
Cz16g10020.t1 No alias Replication protein A, OB domain; Domain of unknown... 0.03 OrthoFinder
Dusal.0019s00033.1 33192542 Domain of unknown function DUF223; Replication factor-A... 0.06 OrthoFinder
Dusal.0019s00034.1 33192532 Replication factor A, C-terminal [Interproscan]. 0.07 OrthoFinder
EOD05089 No alias Replication factor-A protein 1, N-terminal; Replication... 0.02 OrthoFinder
EOD26024 No alias Replication factor-A protein 1, N-terminal; Replication... 0.03 OrthoFinder
EOD33894 No alias Replication factor A, C-terminal; Replication protein A,... 0.03 OrthoFinder
EOD40586 No alias Replication factor-A protein 1, N-terminal; Replication... 0.02 OrthoFinder
OT_15G01170.1 No alias Replication factor-A protein 1, N-terminal; Zinc finger,... 0.03 OrthoFinder
OT_18G01480.1 No alias Replication factor A, C-terminal; Replication protein A,... 0.04 OrthoFinder
Sro773_g200410.1 Contig1379.g12684 Replication protein A 70 kDa DNA-binding subunit 0.03 OrthoFinder
Vocar.0032s0065.1 32893746 Replication factor A, C-terminal; Domain of unknown... 0.02 OrthoFinder
XM_002501123.1 MICPUN_57417, 57417 Replication factor A, C-terminal; OB-fold nucleic acid... 0.04 OrthoFinder
XM_003064552.1 MicpuC2_54461, 54461 Replication protein A, OB domain; Replication factor A,... 0.03 OrthoFinder
lcl|BLLF01001291.1_cds_GFH18369.1_12846 HaLaN_15164, GFH18369 Hypothetical protein 0.03 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20700.1_5289 PRW20700 Replication A 70 kDa DNA-binding subunit B 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013955 Rep_factor-A_C 514 658
IPR004365 NA-bd_OB_tRNA 232 315
IPR031657 REPA_OB_2 341 438
No external refs found!