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  5. lcl|VRMN01000002.1_cds_KAA8497390.1_1119

lcl|VRMN01000002.1_cds_KAA8497390.1_1119 (KAA8497390)


Aliases : KAA8497390

Description : 40S ribosomal protein S23


Gene families : OG_01_0004164 (OrthoFinder) Phylogenetic Tree(s): OG0004164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497390.1_1119
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001264.27 tig00001264_g7883.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder
Cre12.g504200 30792072, RPS23 Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 OrthoFinder
Cz02g32260.t1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.2 OrthoFinder
Dusal.0029s00015.1 33203771 Ribosomal protein S12/S23 [Interproscan]. 0.16 OrthoFinder
EOD07302 No alias Ribosomal protein S12/S23 [Interproscan]. 0.14 OrthoFinder
EOD33195 No alias Ribosomal protein S12/S23 [Interproscan]. 0.14 OrthoFinder
OT_06G01850.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.05 OrthoFinder
PTI_02G00080.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.24 OrthoFinder
Sro922_g220630.1 Contig2958.g23506 40S ribosomal protein S23 0.26 OrthoFinder
SymbC1.scaffold7066.3 7066.3 Ribosomal protein S12/S23 [Interproscan]. 0.02 OrthoFinder
TP05G01460.1 No alias Ribosomal protein S12/S23 [Interproscan]. 0.2 OrthoFinder
XM_002499719.1 MICPUN_89912, 89912 Ribosomal protein S12/S23 [Interproscan]. 0.27 OrthoFinder
XM_003062101.1 MicpuC2_48397, 48397 Ribosomal protein S12/S23 [Interproscan]. 0.1 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45112.1_1697 PRW45112 40S ribosomal S23 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 34 144
No external refs found!