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  5. lcl|VRMN01000002.1_cds_KAA8497381.1_1110

lcl|VRMN01000002.1_cds_KAA8497381.1_1110 (KAA8497381)


Aliases : KAA8497381

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497381.1_1110
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497473.1_6426 KAA8497473 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498172.1_7125 KAA8498172 Transposon Ty3-G Gag-Pol polyprotein 0.13 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500031.1_8984 KAA8500031 Transposon Tf2-6 polyprotein 0.13 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496807.1_536 KAA8496807 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494421.1_2951 KAA8494421 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494622.1_3152 KAA8494622 Transposon Ty3-I Gag-Pol polyprotein 0.22 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495182.1_3712 KAA8495182 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495185.1_3715 KAA8495185 Transposon Ty3-I Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494327.1_4191 KAA8494327 Transposon Ty3-G Gag-Pol polyprotein 0.13 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493427.1_9728 KAA8493427 Integrase, catalytic core [Interproscan]. 0.13 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492973.1_2709 KAA8492973 Transposon Ty3-G Gag-Pol polyprotein 0.13 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492704.1_9397 KAA8492704 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491610.1_5078 KAA8491610 Retrovirus-related Pol polyprotein from transposon 0.13 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491611.1_5079 KAA8491611 Retrovirus-related Pol polyprotein from transposon 17.6 0.13 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491326.1_2327 KAA8491326 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490790.1_5562 KAA8490790 Transposon Ty3-I Gag-Pol polyprotein 0.19 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490538.1_5904 KAA8490538 Transposon Ty3-I Gag-Pol polyprotein 0.13 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490463.1_6409 KAA8490463 Transposon Ty3-G Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490242.1_5206 KAA8490242 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 817 875
IPR001584 Integrase_cat-core 890 1001
IPR041373 RT_RNaseH 611 710
IPR000477 RT_dom 341 501
No external refs found!