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  5. lcl|VRMN01000002.1_cds_KAA8497243.1_972

lcl|VRMN01000002.1_cds_KAA8497243.1_972 (KAA8497243)


Aliases : KAA8497243

Description : 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic


Gene families : OG_01_0000579 (OrthoFinder) Phylogenetic Tree(s): OG0000579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497243.1_972
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.19 tig00021432_g21211.t1 Carbohydrate metabolism.starch... 0.04 OrthoFinder
Cre06.g289850 30779992, SBE1 Carbohydrate metabolism.starch... 0.02 OrthoFinder
OT_03G00880.1 No alias Glycoside hydrolase, family 13, N-terminal; Glycosyl... 0.02 OrthoFinder
SymbC1.scaffold4815.1 4815.1 Glycosyl hydrolase, family 13, catalytic domain;... 0.02 OrthoFinder
Transcript_contig_54516 54516 Glycoside hydrolase, family 13, N-terminal; Glycosyl... 0.02 OrthoFinder
XM_003060431.1 MicpuC2_19221, 19221 Glycoside hydrolase family 13 protein (SBEI) 0.02 OrthoFinder
lcl|BLLF01000180.1_cds_GFH08724.1_3201 HaLaN_03738, GFH08724 Aamy domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56052.1_10358 PRW56052 Starch branching enzyme 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016161 beta-amylase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR006048 A-amylase/branching_C 604 698
IPR006047 Glyco_hydro_13_cat_dom 228 294
IPR004193 Glyco_hydro_13_N 78 156
No external refs found!