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  5. lcl|VRMN01000002.1_cds_KAA8497171.1_900

lcl|VRMN01000002.1_cds_KAA8497171.1_900 (KAA8497171)


Aliases : KAA8497171

Description : Fanconi anemia group M protein-like


Gene families : OG_01_0002709 (OrthoFinder) Phylogenetic Tree(s): OG0002709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497171.1_900
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
EOD38035 No alias Helicase, C-terminal; Helicase/UvrB, N-terminal [Interproscan]. 0.01 OrthoFinder
OT_07G03310.1 No alias Helicase, C-terminal; Helicase/UvrB, N-terminal [Interproscan]. 0.02 OrthoFinder
PTI_14G01350.1 No alias Helicase/UvrB, N-terminal; Helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
Vocar.0013s0152.1 32896246 Helicase, C-terminal; Zinc finger, PHD-finger [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60577.1_4673 PRW60577 Fanconi anemia group M isoform X3 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 419 570
IPR001650 Helicase_C 900 961
No external refs found!