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  5. lcl|VRMN01000002.1_cds_KAA8497022.1_751

lcl|VRMN01000002.1_cds_KAA8497022.1_751 (KAA8497022)


Aliases : KAA8497022

Description : ATP-dependent RNA helicase dhx8


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497022.1_751
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.2 tig00000842_g4821.t2 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
OT_05G03840.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
OT_14G00410.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_07G04380.1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
PTI_28G00240.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.01 OrthoFinder
Transcript_contig_57953 57953 Hypothetical protein 0.01 OrthoFinder
Vocar.0015s0262.1 32898968 Helicase-associated domain; Domain of unknown function... 0.03 OrthoFinder
XM_002507667.1 MICPUN_51830, 51830 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002508712.1 MICPUN_97967, 97967 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
XM_003057993.1 MicpuC2_57106, 57106 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20509.1_5500 PRW20509 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Enrichment
BP GO:0018199 peptidyl-glutamine modification IEP Enrichment
MF GO:0019211 phosphatase activator activity IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 183 263
IPR001650 Helicase_C 698 828
IPR007502 Helicase-assoc_dom 890 978
IPR011709 DUF1605 1036 1111
No external refs found!