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  5. lcl|VRMN01000002.1_cds_KAA8496848.1_577

lcl|VRMN01000002.1_cds_KAA8496848.1_577 (KAA8496848)


Aliases : KAA8496848

Description : ABC transporter D family member 2, chloroplastic


Gene families : OG_01_0000221 (OrthoFinder) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496848.1_577
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021326.43 tig00021326_g20308.t1 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
SymbC1.scaffold2781.3 2781.3 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
Transcript_contig_55223 55223 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_79199 79199 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
XM_002504454.1 MICPUN_66343, 66343 ATP-binding cassette superfamily 0.03 OrthoFinder
lcl|BLLF01000065.1_cds_GFH06943.1_1420 HaLaN_01666, GFH06943 ABC transporter-like [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
BP GO:0008203 cholesterol metabolic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1902652 secondary alcohol metabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 167 418
IPR003439 ABC_transporter-like_ATP-bd 535 675
No external refs found!