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  5. lcl|VRMN01000002.1_cds_KAA8496648.1_377

lcl|VRMN01000002.1_cds_KAA8496648.1_377 (KAA8496648)


Aliases : KAA8496648

Description : Trafficking protein particle complex subunit 2


Gene families : OG_01_0003510 (OrthoFinder) Phylogenetic Tree(s): OG0003510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496648.1_377
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
OT_04G04320.1 No alias Trafficking protein particle complex subunit 2 [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0329.1 32885631 Trafficking protein particle complex subunit 2 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR006722 Sedlin 6 130
No external refs found!