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  5. lcl|VRMN01000002.1_cds_KAA8496452.1_181

lcl|VRMN01000002.1_cds_KAA8496452.1_181 (KAA8496452)


Aliases : KAA8496452

Description : DNA mismatch repair protein Msh3


Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496452.1_181
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cre09.g397845 30781329 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.01 OrthoFinder
Vocar.0003s0199.1 32889046 Methyltransferase domain; Protein of unknown function... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005484 SNAP receptor activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
CC GO:0031011 Ino80 complex IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
CC GO:0033202 DNA helicase complex IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
CC GO:0070603 SWI/SNF superfamily-type complex IEP Enrichment
CC GO:0097346 INO80-type complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
InterPro domains Description Start Stop
IPR007696 DNA_mismatch_repair_MutS_core 443 792
IPR007861 DNA_mismatch_repair_MutS_clamp 667 750
IPR000432 DNA_mismatch_repair_MutS_C 854 1050
IPR007695 DNA_mismatch_repair_MutS-lik_N 157 272
No external refs found!