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Aliases : KAA8499911
Description : 5'-3' exoribonuclease 2
Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000001.1_cds_KAA8499911.1_8864 | |
| Cluster | HCCA: Cluster_67 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre16.g679900 | 30777977, XRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cz03g05220.t1 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0001s00024.1 | 33198788 | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0097s00006.1 | 33203701 | Putative 5-3 exonuclease; Xrn1, helical domain; 5'-3'... | 0.02 | OrthoFinder | |
| PTI_01G08180.1 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.02 | OrthoFinder | |
| Sro1238_g255270.1 | Contig4178.g31874 | 5'-3' exoribonuclease 2 | 0.01 | OrthoFinder | |
| Sro386_g131870.1 | Contig4061.g31128 | 5'-3' exoribonuclease 1 | 0.01 | OrthoFinder | |
| Sro654_g182080.1 | Contig1277.g11898 | 5'-3' exoribonuclease | 0.03 | OrthoFinder | |
| Sro662_g183380.1 | Contig3613.g27932 | 5'-3' exoribonuclease | 0.01 | OrthoFinder | |
| SymbC1.scaffold2866.4 | 2866.4 | La-type HTH domain; Putative 5-3 exonuclease; Xrn1,... | 0.01 | OrthoFinder | |
| XM_002499994.1 | MICPUN_98971, 98971 | Putative 5-3 exonuclease [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003061919.1 | MicpuC2_69996, 69996 | 5'-3' exoribonuclease 1, SH3-like domain [Interproscan]. | 0.01 | OrthoFinder | |
| lcl|LHPG02000004.1_cds_PRW59001.1_7182 | PRW59001 | 5-3 exoribonuclease 1 | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000139 | Golgi membrane | IEP | Enrichment |
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| MF | GO:0004175 | endopeptidase activity | IEP | Enrichment |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
| MF | GO:0004425 | indole-3-glycerol-phosphate synthase activity | IEP | Enrichment |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| MF | GO:0005548 | phospholipid transporter activity | IEP | Enrichment |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Enrichment |
| BP | GO:0006508 | proteolysis | IEP | Enrichment |
| BP | GO:0006906 | vesicle fusion | IEP | Enrichment |
| BP | GO:0007030 | Golgi organization | IEP | Enrichment |
| MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
| MF | GO:0008237 | metallopeptidase activity | IEP | Enrichment |
| BP | GO:0015748 | organophosphate ester transport | IEP | Enrichment |
| BP | GO:0015914 | phospholipid transport | IEP | Enrichment |
| BP | GO:0016050 | vesicle organization | IEP | Enrichment |
| BP | GO:0016567 | protein ubiquitination | IEP | Enrichment |
| MF | GO:0017025 | TBP-class protein binding | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Enrichment |
| MF | GO:0030145 | manganese ion binding | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0048280 | vesicle fusion with Golgi apparatus | IEP | Enrichment |
| BP | GO:0048284 | organelle fusion | IEP | Enrichment |
| BP | GO:0061025 | membrane fusion | IEP | Enrichment |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Enrichment |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Enrichment |
| BP | GO:0090174 | organelle membrane fusion | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Enrichment |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Enrichment |
| No external refs found! |