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  5. lcl|VRMN01000001.1_cds_KAA8499724.1_8677

lcl|VRMN01000001.1_cds_KAA8499724.1_8677 (KAA8499724)


Aliases : KAA8499724

Description : Cell division cycle protein 48-like


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499724.1_8677
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021463.11 tig00021463_g21619.t1 Cell division control protein 48 homolog A... 0.02 OrthoFinder
Cre06.g269950 30778959, CDC48 Cell division control protein 48 homolog E... 0.03 OrthoFinder
Cz16g22130.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
Dusal.0008s00033.1 33198881 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.03 OrthoFinder
OT_01G03790.1 No alias AAA ATPase, AAA+ lid domain; Vps4 oligomerisation,... 0.04 OrthoFinder
PTI_10G03270.1 No alias ATPase, AAA-type, core; Vps4 oligomerisation, C-terminal... 0.03 OrthoFinder
Sro287_g108550.1 Contig252.g3096 Transitional endoplasmic reticulum ATPase 0.02 OrthoFinder
Sro31_g020450.1 Contig420.g5640 Peroxisomal biogenesis factor 6 0.01 OrthoFinder
Transcript_contig_54277 54277 CDC48, N-terminal subdomain; AAA ATPase, AAA+ lid... 0.03 OrthoFinder
Vocar.0011s0260.1 32895194 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 151 213
IPR003959 ATPase_AAA_core 265 394
IPR003959 ATPase_AAA_core 538 671
IPR003338 CDC4_N-term_subdom 50 131
IPR015415 Vps4_C 749 783
IPR041569 AAA_lid_3 693 729
IPR041569 AAA_lid_3 417 458
No external refs found!