lcl|VRMN01000001.1_cds_KAA8499408.1_8361 (KAA8499408)


Aliases : KAA8499408

Description : Retrotransposon gag domain; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0002023 (OrthoFinder) Phylogenetic Tree(s): OG0002023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499408.1_8361
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499406.1_8359 KAA8499406 Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497003.1_732 KAA8497003 Copia protein 0.12 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494832.1_3362 KAA8494832 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494877.1_3407 KAA8494877 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492110.1_5293 KAA8492110 Hypothetical protein 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001878 Znf_CCHC 212 228
IPR005162 Retrotrans_gag_dom 50 138
No external refs found!