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  5. lcl|VRMN01000001.1_cds_KAA8499347.1_8300

lcl|VRMN01000001.1_cds_KAA8499347.1_8300 (KAA8499347)


Aliases : KAA8499347

Description : Transposable element Tc3 transposase


Gene families : OG_01_0001874 (OrthoFinder) Phylogenetic Tree(s): OG0001874_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499347.1_8300
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499655.1_8608 KAA8499655 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496442.1_171 KAA8496442 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496539.1_268 KAA8496539 Transposable element Tc3 transposase 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495124.1_3654 KAA8495124 Transposable element Tc3 transposase 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493856.1_4618 KAA8493856 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492041.1_5224 KAA8492041 Transposable element Tc3 transposase 0.15 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492081.1_5264 KAA8492081 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492318.1_5501 KAA8492318 Transposable element Tc3 transposase 0.3 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491309.1_2310 KAA8491309 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491321.1_2322 KAA8491321 Transposable element Tcb2 transposase 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490747.1_6003 KAA8490747 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490543.1_5909 KAA8490543 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490369.1_5759 KAA8490369 Transposable element Tcb2 transposase 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 147 296
IPR025898 Tc3_transposase_DNA-bd_dom 3 46
No external refs found!