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  5. lcl|VRMN01000001.1_cds_KAA8499337.1_8290

lcl|VRMN01000001.1_cds_KAA8499337.1_8290 (KAA8499337)


Aliases : KAA8499337

Description : Copia protein


Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499337.1_8290
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498070.1_7023 KAA8498070 Copia protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498096.1_7049 KAA8498096 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498655.1_7608 KAA8498655 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496290.1_19 KAA8496290 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495231.1_1229 KAA8495231 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495709.1_1707 KAA8495709 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496139.1_2137 KAA8496139 Copia protein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493452.1_9753 KAA8493452 Copia protein 0.03 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491889.1_4897 KAA8491889 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491900.1_4908 KAA8491900 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491988.1_4996 KAA8491988 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491561.1_6371 KAA8491561 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491582.1_6392 KAA8491582 Copia protein 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491287.1_2288 KAA8491287 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490999.1_6202 KAA8490999 Copia protein 0.04 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490344.1_5686 KAA8490344 Copia protein 0.05 OrthoFinder
lcl|VRMN01000037.1_cds_KAA8490263.1_6396 KAA8490263 Copia protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
BP GO:0016540 protein autoprocessing IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 514 611
IPR013103 RVT_2 918 1148
IPR005162 Retrotrans_gag_dom 123 211
No external refs found!