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  5. lcl|VRMN01000001.1_cds_KAA8499078.1_8031

lcl|VRMN01000001.1_cds_KAA8499078.1_8031 (KAA8499078)


Aliases : KAA8499078

Description : SWI/SNF chromatin-remodeling complex subunit snf22


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499078.1_8031
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000863.2 tig00000863_g4959.t1 TATA-binding protein-associated factor BTAF1... 0.02 OrthoFinder
Cre03.g158550 30787160 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
EOD31071 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 705 816
IPR000330 SNF2_N 377 661
No external refs found!