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  5. lcl|VRMN01000001.1_cds_KAA8499016.1_7969

lcl|VRMN01000001.1_cds_KAA8499016.1_7969 (KAA8499016)


Aliases : KAA8499016

Description : 40S ribosomal protein S24-2


Gene families : OG_01_0003099 (OrthoFinder) Phylogenetic Tree(s): OG0003099_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8499016.1_7969
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000361.64 tig00000361_g24416.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.2 OrthoFinder
Cre10.g456200 30790790, RPS24 Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder
Cz13g15140.t1 No alias Ribosomal protein S24e [Interproscan]. 0.17 OrthoFinder
Dusal.0101s00022.1 33199178 Ribosomal protein S24e [Interproscan]. 0.15 OrthoFinder
EOD04609 No alias Ribosomal protein S24e [Interproscan]. 0.17 OrthoFinder
EOD07443 No alias Ribosomal protein S24e [Interproscan]. 0.17 OrthoFinder
EOD15137 No alias Ribosomal protein S24e [Interproscan]. 0.17 OrthoFinder
OT_15G02130.1 No alias Ribosomal protein S24e [Interproscan]. 0.06 OrthoFinder
PTI_12G01490.1 No alias Ribosomal protein S24e [Interproscan]. 0.21 OrthoFinder
Sro1425_g271600.1 Contig1471.g13488 40S ribosomal protein S24 0.31 OrthoFinder
TP06G03620.1 No alias Ribosomal protein S24e [Interproscan]. 0.25 OrthoFinder
Vocar.0030s0141.1 32894415 Ribosomal protein S24e [Interproscan]. 0.14 OrthoFinder
XM_002505242.1 MICPUN_92037, 92037 Ribosomal protein S24e [Interproscan]. 0.23 OrthoFinder
XM_003060283.1 MicpuC2_60015, 60015 Ribosomal protein S24e [Interproscan]. 0.12 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57383.1_8825 PRW57383 40S ribosomal S24 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR001976 Ribosomal_S24e 25 99
No external refs found!