lcl|VRMN01000001.1_cds_KAA8498881.1_7834 (KAA8498881)

Aliases : KAA8498881

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94

Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000001.1_cds_KAA8498881.1_7834
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498096.1_7049	KAA8498096	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.05	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496290.1_19	KAA8496290	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495709.1_1707	KAA8495709	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491889.1_4897	KAA8491889	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491988.1_4996	KAA8491988	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491270.1_2271	KAA8491270	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.06	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491285.1_2286	KAA8491285	Copia protein	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	Enrichment
MF	GO:0004527	exonuclease activity	IEP	Enrichment
MF	GO:0008408	3'-5' exonuclease activity	IEP	Enrichment
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	552	780
IPR001584	Integrase_cat-core	207	305

External Links

No external refs found!