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  5. lcl|VRMN01000001.1_cds_KAA8498197.1_7150

lcl|VRMN01000001.1_cds_KAA8498197.1_7150 (KAA8498197)


Aliases : KAA8498197

Description : E3 ubiquitin-protein ligase HERC2


Gene families : OG_01_0000941 (OrthoFinder) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8498197.1_7150
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021275.6 tig00021275_g19870.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00021275.7 tig00021275_g19870.t1 Vesicle trafficking.autophagosome formation.cargo... 0.01 OrthoFinder
Cz03g01050.t1 No alias Zinc finger, ZZ-type; Zinc finger, C3HC4 type (RING... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58102.1_7966 PRW58102 E3 ubiquitin-ligase PRT1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0015937 coenzyme A biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR000270 PB1_dom 27 116
IPR000433 Znf_ZZ 349 388
No external refs found!