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  5. lcl|VRMN01000001.1_cds_KAA8497819.1_6772

lcl|VRMN01000001.1_cds_KAA8497819.1_6772 (KAA8497819)


Aliases : KAA8497819

Description : DNA topoisomerase 2


Gene families : OG_01_0001339 (OrthoFinder) Phylogenetic Tree(s): OG0001339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497819.1_6772
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.55 tig00021432_g21247.t1 DNA topoisomerase 2 OS=Pisum sativum 0.09 OrthoFinder
Cpa|evm.model.tig00021433.2 tig00021433_g21256.t1 DNA topoisomerase 2 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre01.g009250 30789357, TOP2 Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.07 OrthoFinder
Cz11g19140.t1 No alias DNA topoisomerase, type IIA, subunit B, domain 2; TOPRIM... 0.07 OrthoFinder
Dusal.0487s00005.1 33203263 Histidine kinase/HSP90-like ATPase; C-terminal... 0.06 OrthoFinder
EOD17812 No alias Putative DNA topoisomerase II [Ensembl]. 0.01 OrthoFinder
EOD22469 No alias DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.08 OrthoFinder
OT_13G00120.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit B,... 0.07 OrthoFinder
PTI_12G02730.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.06 OrthoFinder
Sro150_g068880.1 Contig1519.g13851 DNA topoisomerase 2 top-2 0.05 OrthoFinder
TP10G02490.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.05 OrthoFinder
Vocar.0024s0199.1 32890400 Histidine kinase/HSP90-like ATPase; TOPRIM domain; DNA... 0.04 OrthoFinder
XM_002501981.1 MICPUN_58377, 58377 DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.08 OrthoFinder
XM_003057460.1 MicpuC2_46870, 46870 TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.02 OrthoFinder
lcl|BLLF01001294.1_cds_GFH18390.1_12867 HaLaN_15188, GFH18390 DNA topoisomerase 2 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58281.1_7787 PRW58281 DNA topoisomerase 2 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR031660 TOPRIM_C 563 692
IPR013506 Topo_IIA_bsu_dom2 265 415
IPR002205 Topo_IIA_A/C 694 1162
IPR006171 TOPRIM_domain 447 547
IPR003594 HATPase_C 74 170
No external refs found!