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Aliases : KAA8497725
Description : RRNA-processing protein fcf2
Gene families : OG_01_0004415 (OrthoFinder) Phylogenetic Tree(s): OG0004415_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000001.1_cds_KAA8497725.1_6678 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021612.48 | tig00021612_g22889.t1 | No description available | 0.03 | OrthoFinder | |
| Cre03.g194150 | 30786596 | No description available | 0.02 | OrthoFinder | |
| Cz07g30140.t1 | No alias | Fcf2 pre-rRNA processing, C-terminal [Interproscan]. | 0.06 | OrthoFinder | |
| OT_17G01530.1 | No alias | Fcf2 pre-rRNA processing, C-terminal [Interproscan]. | 0.05 | OrthoFinder | |
| PTI_11G02610.1 | No alias | Fcf2 pre-rRNA processing, C-terminal [Interproscan]. | 0.12 | OrthoFinder | |
| Sro565_g167680.1 | Contig2465.g20193 | Deoxynucleotidyltransferase terminal-interacting protein 2 | 0.02 | OrthoFinder | |
| Vocar.0035s0071.1 | 32896783 | Fcf2 pre-rRNA processing, C-terminal [Interproscan]. | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
| MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006177 | GMP biosynthetic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Enrichment |
| BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Enrichment |
| BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Enrichment |
| BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Enrichment |
| BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| BP | GO:0016579 | protein deubiquitination | IEP | Enrichment |
| MF | GO:0016874 | ligase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
| MF | GO:0030515 | snoRNA binding | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0046037 | GMP metabolic process | IEP | Enrichment |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR014810 | Fcf2_C | 152 | 245 |
| No external refs found! |