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  5. lcl|VRMN01000001.1_cds_KAA8497593.1_6546

lcl|VRMN01000001.1_cds_KAA8497593.1_6546 (KAA8497593)


Aliases : KAA8497593

Description : Transposable element Tc3 transposase


Gene families : OG_01_0001874 (OrthoFinder) Phylogenetic Tree(s): OG0001874_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000001.1_cds_KAA8497593.1_6546
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499655.1_8608 KAA8499655 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496442.1_171 KAA8496442 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496539.1_268 KAA8496539 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495124.1_3654 KAA8495124 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493856.1_4618 KAA8493856 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492406.1_9099 KAA8492406 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492041.1_5224 KAA8492041 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492318.1_5501 KAA8492318 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491309.1_2310 KAA8491309 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491321.1_2322 KAA8491321 Transposable element Tcb2 transposase 0.13 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490747.1_6003 KAA8490747 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490520.1_4670 KAA8490520 Transposable element Tc3 transposase 0.03 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490369.1_5759 KAA8490369 Transposable element Tcb2 transposase 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 39 188
No external refs found!