1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_29G00400.1

PTI_29G00400.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000435 (OrthoFinder) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_29G00400.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
PTI_01G00030.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_01G10570.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_01G10580.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_04G04200.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_04G04210.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_06G03640.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
PTI_11G04460.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_12G02130.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_13G00190.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_13G02370.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_24G01590.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_24G01670.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_26G00280.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_31G00970.1 No alias Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0015708 silicic acid import across plasma membrane IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Enrichment
BP GO:0098656 anion transmembrane transport IEP Enrichment
BP GO:0098657 import into cell IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098661 inorganic anion transmembrane transport IEP Enrichment
BP GO:0098739 import across plasma membrane IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 1128 1249
No external refs found!