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  5. PTI_28G01510.1

PTI_28G01510.1


Description : ATP-dependent RNA helicase Ski2, C-terminal; Helicase, C-terminal; rRNA-processing arch domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_28G01510.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020723.108 tig00020723_g13518.t1 RNA processing.RNA decay.exosome complex.associated... 0.08 OrthoFinder
Cre02.g117900 30785394 RNA processing.RNA decay.exosome complex.associated... 0.07 OrthoFinder
Cre06.g289950 30779809 RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder
Cz02g30020.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
Cz08g28230.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.15 OrthoFinder
Dusal.0215s00004.1 33185763 ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.01 OrthoFinder
Dusal.0632s00002.1 33192374 ATP-dependent RNA helicase Ski2, C-terminal;... 0.04 OrthoFinder
Dusal.0632s00003.1 33192367 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.02 OrthoFinder
EOD25937 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.1 OrthoFinder
EOD31566 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.13 OrthoFinder
OT_06G03030.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.15 OrthoFinder
Sro345_g122480.1 Contig2266.g18807 Viralicidic activity 2-like 2 0.06 OrthoFinder
Sro55_g032450.1 Contig4458.g33519 Viralicidic activity 2-like 2 0.02 OrthoFinder
Vocar.0009s0027.1 32893340 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.03 OrthoFinder
Vocar.0063s0039.1 32883464 DEAD/DEAH box helicase domain; ATP-dependent RNA... 0.04 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.21 OrthoFinder
XM_002506163.1 MICPUN_88392, 88392 ATP-dependent RNA helicase Ski2, C-terminal;... 0.04 OrthoFinder
XM_003061861.1 MicpuC2_44758, 44758 rRNA-processing arch domain; Helicase, C-terminal;... 0.06 OrthoFinder
lcl|BLLF01003501.1_cds_GFH27512.1_21989 HaLaN_25843, GFH27512 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01004163.1_cds_GFH29062.1_23539 HaLaN_27657, GFH29062 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01005152.1_cds_GFH30799.1_25276 HaLaN_29719, GFH30799 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.03 OrthoFinder
lcl|BLLF01009432.1_cds_GFH33722.1_28199 HaLaN_33132, GFH33722 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61094.1_711 PRW61094 Superkiller viralicidic activity 2-like 2 isoform B 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61095.1_712 PRW61095 Superkiller viralicidic activity 2-like 2 isoform A 0.02 OrthoFinder
lcl|LHPG02000027.1_cds_PRW05917.1_5938 PRW05917 Superkiller viralicidic activity 2-like 2 isoform B 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 463 568
IPR012961 Ski2_C 943 1115
IPR011545 DEAD/DEAH_box_helicase_dom 165 311
IPR025696 rRNA_proc-arch_dom 622 914
No external refs found!