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  5. PTI_28G01000.1

PTI_28G01000.1


Description : mRNA splicing factor SYF2 [Interproscan].


Gene families : OG_01_0000026 (OrthoFinder) Phylogenetic Tree(s): OG0000026_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_28G01000.1
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Dusal.0574s00008.1 33187461 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
OT_06G02120.1 No alias Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
Sro318_g115950.1 Contig3475.g26939 Cis-trans isomerase 0.02 OrthoFinder
Sro47_g027660.1 Contig1172.g11159 Cis-trans isomerase 0.01 OrthoFinder
Transcript_contig_79452 79452 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
Vocar.0034s0033.1 32893104 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
XM_002502665.1 MICPUN_58982, 58982 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006897 endocytosis IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016289 CoA hydrolase activity IEP Enrichment
MF GO:0016790 thiolester hydrolase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0043085 positive regulation of catalytic activity IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044093 positive regulation of molecular function IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
MF GO:0061608 nuclear import signal receptor activity IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:0110154 RNA decapping IEP Enrichment
BP GO:0110156 methylguanosine-cap decapping IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013260 mRNA_splic_SYF2 86 230
No external refs found!