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  5. PTI_26G01600.1

PTI_26G01600.1


Description : Ribosomal protein S28e [Interproscan].


Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_26G01600.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cre12.g510450 30792329, RPS28 Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder
Cz13g13220.t1 No alias Ribosomal protein S28e [Interproscan]. 0.06 OrthoFinder
EOD20419 No alias Ribosomal protein S28e [Interproscan]. 0.08 OrthoFinder
EOD23634 No alias Ribosomal protein S28e [Interproscan]. 0.08 OrthoFinder
OT_07G03760.1 No alias Ribosomal protein S28e [Interproscan]. 0.05 OrthoFinder
Sro2078_g313630.1 Contig3499.g27144 40S ribosomal protein S28 0.1 OrthoFinder
TP24G00120.1 No alias Ribosomal protein S28e [Interproscan]. 0.03 OrthoFinder
Vocar.0016s0208.1 32898111 Ribosomal protein S28e [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61606.1_274 PRW61606 40S ribosomal S28 0.02 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490545.1_5911 KAA8490545 40S ribosomal protein S28 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 3 66
No external refs found!