Heatmap: Cluster_3 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
4h after treatment
4h after treatment,No nitrate
8h after treatment
8h after treatment,No nitrate
20C
20h after treatment
20h after treatment,No nitrate
20h after treatment,Nocodazole added
36h after treatment
36h after treatment,No phosphate
Blue light,10min after light change
Blue light,60min after light change
Bohlin
CCAP1055/1,20C
CCAP1055/1,20C,High CO2,OligoDT primed
CCAP1055/1,20C,Low CO2,OligoDT primed
CCAP1055/1,20C,Normal CO2,OligoDT primed
CCMP2561
CCMP2561 Nitrase Reductase Knockout
CCMP632
CCMP632,24h
CCMP632,48h
CCMP632,72h
CCMP632,High light acclimated WT
CCMP632,Low light acclimated WT
NEPCC640,8h,1000ppmv CO2
NEPCC640,8h,390 ppmv CO2
No light,8h after treatment
Pt-1
Pt-1 8.6
Pt-1 8.6,With nitrogen
Pt-1 8.6,Without nitrogen
Red light,0min before light change
UTEX 646,Blue light
UTEX 646,No light
-0.18 0.41 -0.02 0.24 -0.87 -0.06 0.38 0.45 -0.36 -0.14 -1.03 -0.34 -1.52 -0.85 -0.01 -0.5 0.05 0.05 0.14 -0.38 -0.35 0.29 -0.56 0.34 -0.02 -0.39 -0.57 -0.71 -0.99 1.27 0.91 1.27 -0.46 0.86 -2.42
-2.44 -0.68 -1.6 -0.47 -2.15 -0.77 0.03 -0.48 -0.85 -0.39 -2.49 -2.44 2.69 -2.69 -1.84 -1.08 -0.82 0.25 -0.79 0.48 -0.69 -0.36 -1.21 0.47 0.14 0.95 -0.58 -3.11 -2.3 1.89 1.16 2.09 -2.87 -2.32 -4.67
-0.64 -0.02 -0.35 -0.21 -0.63 -0.16 -0.15 -0.47 -0.37 -0.42 -1.05 -0.81 -0.91 -0.97 -0.41 -0.9 -0.19 0.05 -0.42 -0.26 -0.43 -0.38 -0.58 1.0 0.67 0.62 -0.17 -1.19 -1.07 1.7 1.36 1.26 -0.88 0.55 -0.26
- -1.89 -2.19 -1.84 1.62 - - 1.72 -1.98 -0.84 - - - - -0.58 - -1.94 -1.23 -1.33 -4.05 -1.0 -0.04 0.43 - - -0.48 -0.22 - -3.21 3.74 2.88 - - - -
-2.88 -4.21 -2.43 -4.63 -3.46 -2.27 -5.1 0.53 -3.57 -2.88 -4.85 -4.09 -5.74 -4.22 -5.79 -8.83 -7.56 -0.69 -2.29 -5.51 -1.68 -0.49 -6.58 0.65 -3.18 -0.43 1.92 -8.05 -3.11 3.28 2.96 2.35 -5.21 0.61 -5.94
-5.19 -4.21 -2.66 -5.02 0.89 - -8.02 0.71 - - -1.1 -2.09 - - - - - -2.04 -3.3 -6.43 -1.5 -1.57 - -6.94 - 0.68 2.01 - -25.43 3.52 3.34 0.7 -1.07 -4.81 -2.69
-0.66 -0.78 -0.58 -0.89 -0.18 -1.14 -0.9 -0.8 -0.87 -0.84 -0.41 -0.11 -2.54 -1.75 -1.7 -4.09 -2.51 -1.14 -1.18 1.42 1.61 0.8 0.13 0.12 0.48 -1.76 -1.43 -1.25 -1.12 2.95 0.89 0.92 -0.22 -1.7 -2.48
-1.36 -0.85 -1.47 -0.66 -1.42 -0.96 0.46 -0.82 -0.65 -0.43 0.16 0.14 -0.26 -0.3 -1.64 -1.39 -1.78 -0.64 -0.45 -1.31 -2.71 -1.13 -2.52 -0.83 -1.02 2.08 2.59 -1.06 -0.72 1.08 1.72 0.24 0.05 -0.21 -0.86
-2.19 -1.73 -1.62 -0.87 -0.52 -1.54 -0.93 -0.91 -0.73 -1.34 -1.36 -2.14 0.37 -0.59 -0.46 -0.7 0.03 -0.23 0.54 -0.06 -1.38 0.16 -1.29 0.83 0.05 1.05 2.22 -1.49 -2.05 1.81 1.57 0.59 -3.23 0.14 0.1
-0.37 -2.33 -0.82 -2.8 -1.58 -0.58 -2.98 -0.45 -1.43 -1.51 -2.7 -2.4 -2.01 -1.66 0.58 -1.23 1.49 -1.75 -1.58 -1.55 -2.67 -1.96 -4.12 1.82 1.02 0.93 1.77 -2.06 -1.01 2.02 2.45 0.42 -2.49 -0.5 -1.8
-6.21 -1.65 -4.73 -1.1 -2.99 -3.99 -0.56 -1.28 -2.31 -1.17 -3.07 -2.43 3.43 0.17 -6.21 -5.49 -4.36 -1.4 -1.43 1.67 -3.28 -2.54 -4.4 -1.03 -0.96 1.16 -0.54 -1.6 -0.49 2.15 -0.21 2.4 -3.1 -5.42 -6.07
-2.99 -0.7 -2.75 -0.81 -2.01 -1.43 0.02 -0.38 -1.12 -1.04 -3.02 -2.6 2.33 -0.38 -4.22 -3.25 -3.91 -1.1 -1.27 1.23 -1.02 -1.01 -0.82 -0.83 -0.42 -1.05 -1.32 -0.37 -0.29 2.39 -0.0 3.12 -3.09 -2.96 -3.1
-0.67 0.17 -0.32 -0.01 -0.46 -0.01 0.23 -0.41 -0.13 -0.3 -1.24 -0.73 -1.37 -0.05 -0.09 -1.1 0.26 0.62 0.95 -1.01 -1.5 -0.27 -1.64 0.8 -0.09 -0.29 -0.04 -1.76 -0.88 1.58 1.51 1.2 -1.07 0.44 -1.5
-2.55 -1.08 -2.38 -0.7 -1.55 -1.21 -0.19 -0.71 -1.03 -1.38 0.07 -0.43 -3.17 -0.2 -1.9 -1.88 -2.3 -1.03 -0.28 -0.77 -2.1 -0.42 -1.84 -0.65 -1.2 1.86 2.95 -3.59 -0.31 1.39 1.84 0.03 -0.07 0.41 -0.13
-0.05 0.54 0.03 0.18 -0.71 0.45 0.35 -0.06 -0.03 0.23 -0.82 -0.45 -1.45 0.12 0.21 -0.98 1.22 0.34 0.87 -1.27 -0.36 0.18 -1.2 0.46 -1.47 -0.53 -1.21 -1.93 -1.63 1.1 0.95 0.73 -0.6 0.48 -2.21
1.08 0.9 1.11 -0.21 2.3 -1.04 0.58 1.19 0.39 1.03 -1.51 -0.44 - -0.73 - - - -1.35 -1.87 0.03 1.81 0.55 - - - - - - -3.11 2.07 - - -1.9 -7.37 1.32
-0.36 0.26 -0.17 0.37 -0.39 0.11 0.36 -0.44 0.26 0.28 -0.71 -0.49 0.22 -0.64 -1.25 -1.27 -1.64 0.31 0.33 -1.27 0.58 0.2 0.47 0.49 -0.02 -0.94 -1.31 -0.0 -0.26 1.19 1.22 0.5 -0.61 -0.22 -0.67
-2.03 -1.22 -1.97 -1.21 -1.58 -0.79 -0.66 -0.27 -0.77 -1.01 -1.52 -1.55 -0.88 -1.88 -1.77 -2.04 -1.45 -1.32 -0.13 0.3 -0.85 -0.92 -1.27 0.96 0.77 1.09 2.44 -1.61 0.15 1.81 2.01 0.82 -1.78 -0.55 -0.25
-0.31 0.13 -0.24 -0.2 -0.38 0.23 0.03 -0.36 -0.09 -0.01 -2.03 -1.8 -0.31 -0.74 0.38 -1.06 0.68 0.25 0.71 -0.96 -0.11 -0.58 -0.83 0.79 0.19 0.12 0.01 -0.53 -0.55 1.39 1.19 1.12 -1.86 -0.66 -0.84
-0.22 -0.78 -0.54 -1.11 -1.21 -0.39 -1.2 0.29 -0.92 -0.71 -1.5 -1.61 -0.47 -2.2 0.53 -0.07 -0.08 -0.42 -0.42 -0.31 -1.13 -0.84 -2.36 1.35 0.38 0.9 0.95 -2.07 -0.15 1.7 2.11 0.15 -1.38 0.09 0.05
-0.42 0.14 -0.56 -0.15 -0.15 0.26 0.04 -0.42 0.28 0.08 -0.54 -0.6 -1.0 -0.52 -0.09 -0.69 -0.39 -0.42 0.03 -0.23 0.62 0.13 0.15 1.31 0.3 0.48 -0.01 -0.55 -1.59 0.91 0.77 0.06 -0.66 0.04 -0.3
- - - - 0.66 - - - - - 0.97 1.08 - 0.38 1.34 - 2.18 -0.18 -0.27 - - - - 2.18 1.44 - - -0.41 0.58 2.18 -0.31 1.52 -0.47 -0.29 -3.55
-3.5 -2.53 -4.24 -2.97 1.06 - -3.12 -0.16 - -2.68 0.2 0.49 -1.63 -3.81 - - - -2.77 -3.28 - -4.63 -1.93 -3.48 - -2.18 0.6 2.44 - -7.17 3.08 2.77 1.86 0.16 -3.52 -1.17
- - - - - - - 1.67 - - 2.35 0.55 - - - - - - - -0.54 0.68 - - - - - - - - 2.9 3.44 - 2.23 - -
- - - - 3.67 - - - - - - - - - - - - - - - - 3.1 - - - - - - - 3.78 - - - - -
-0.08 0.59 -0.0 0.19 -0.68 0.24 0.13 -0.12 -0.18 0.01 -1.06 -0.55 -0.84 -0.95 -0.18 -1.08 -0.41 0.16 0.24 -0.62 -0.7 -0.01 -1.14 0.67 -0.11 -0.27 -0.79 -0.55 -1.16 1.52 1.38 1.06 -0.6 0.39 -0.4
0.04 -1.08 -0.44 -1.54 -1.32 -0.73 -2.78 -0.0 -1.69 -1.81 0.06 0.06 -1.24 -1.59 -0.4 -0.99 0.19 -1.07 -0.64 0.19 -1.44 -0.16 -2.74 1.6 -0.59 -0.87 -1.37 0.82 0.37 1.83 1.45 1.47 -0.06 0.79 0.42
0.46 -0.34 -0.29 -0.77 -1.39 -0.1 -0.48 0.5 -0.66 -0.58 -1.22 -1.25 0.04 -2.05 -0.4 -0.94 -1.82 -0.06 -0.23 -1.08 -1.08 -0.86 -2.02 1.68 -0.46 0.3 0.92 -1.83 -0.77 1.72 1.8 0.97 -1.65 1.08 -1.53
0.49 -0.58 -0.2 -1.27 -0.42 0.6 -1.14 0.34 -0.26 -0.21 -1.54 -1.24 -0.64 -3.02 0.77 -0.23 0.34 -1.44 -1.13 -0.73 -0.73 -1.3 -1.81 1.67 0.01 1.6 0.77 -0.57 -1.03 0.98 1.67 -0.84 -1.44 0.03 -0.59
-1.79 -1.12 -1.73 -0.88 -1.18 -1.54 -0.48 -1.36 -1.24 -1.07 0.45 -0.36 0.08 0.01 -0.73 -1.4 -0.6 -0.5 -0.13 -0.45 -0.27 -0.28 0.15 0.03 0.78 1.48 2.31 -1.24 0.07 0.82 0.84 0.28 -0.46 -0.06 0.29
-2.36 -3.06 -2.55 -3.71 -3.12 -2.92 -3.44 -1.93 -3.93 -3.64 -2.09 -1.68 1.25 -1.74 -2.88 -2.02 -2.75 -2.13 -2.23 0.77 -1.81 -0.61 -1.84 0.59 0.07 -0.25 1.76 -3.74 -0.46 2.62 3.0 1.45 -2.39 -0.9 0.47
-0.86 -1.09 -1.32 -1.17 -0.83 -0.42 -0.72 0.01 -0.41 -0.65 -1.09 -0.94 -0.86 -1.85 -0.16 -0.84 -0.38 -0.27 0.07 -0.96 -0.4 -0.01 -0.91 0.93 -0.17 0.58 1.22 0.08 -0.21 1.58 2.16 -0.02 -0.77 0.39 0.29
-0.55 0.19 -0.25 -0.08 -0.47 0.09 -0.01 -0.31 -0.16 -0.01 -0.68 -0.21 -0.62 -0.07 0.22 -0.41 0.39 0.4 0.64 -0.71 -0.14 0.03 -0.81 0.61 -0.14 -0.37 -0.68 -0.56 -0.97 1.14 0.92 0.69 -0.48 0.25 -0.05
-0.84 -1.58 -1.64 -2.06 -1.31 -1.04 -2.17 -0.32 -1.42 -1.52 -2.29 -2.44 -0.55 -2.47 0.68 -0.37 0.25 -1.44 -0.01 -0.95 -0.27 -0.6 -2.01 1.82 0.82 1.18 1.12 -0.93 -0.67 1.64 1.97 -0.34 -2.18 0.13 1.29
-0.51 0.36 -0.14 0.86 -0.28 -0.57 0.29 0.66 -0.96 -0.29 -1.46 -1.17 0.89 -0.2 -1.2 -1.53 -0.59 -0.57 -0.09 -0.77 -0.86 -0.19 -1.79 0.75 -0.83 0.76 -0.26 -1.32 0.17 1.26 1.53 0.47 -1.19 0.54 -0.14
-0.37 -0.55 -1.36 -0.94 -0.21 -0.1 -0.6 -0.98 0.37 0.04 -0.13 0.03 -1.53 -1.35 -0.04 -0.85 0.07 -0.43 0.33 -0.51 -2.04 -0.74 -2.03 0.02 -1.04 0.63 2.65 -0.28 -0.77 0.52 1.51 -1.61 0.41 0.16 -0.88
-0.85 -2.62 -0.74 -2.01 -0.67 -0.23 -2.05 -0.36 0.11 -0.14 -1.43 -1.93 -1.88 -2.56 -1.34 -2.73 -2.41 -1.01 -0.85 0.29 0.07 -1.12 0.06 0.82 1.03 0.99 2.56 -2.21 0.36 1.37 1.92 0.26 -3.05 -0.15 -0.89
0.16 -0.61 -0.43 -0.87 -0.6 0.24 -1.04 0.49 -0.01 -0.32 -1.92 -1.85 -1.22 -2.41 0.22 0.01 -1.78 -0.93 -0.59 -1.42 -0.27 -0.18 -1.68 1.69 -0.04 0.73 0.59 -0.33 -0.78 1.39 1.85 -0.18 -1.52 0.05 0.98
-1.67 -1.19 -1.64 -0.7 -2.13 -0.99 0.09 -0.01 -0.72 -0.45 -0.63 -1.19 1.68 0.65 -2.8 -2.37 -2.95 0.19 -0.16 1.12 -0.24 -0.36 -0.65 0.67 0.56 -0.41 -0.92 -0.36 -0.65 1.77 0.33 2.08 -1.5 -0.21 -1.04
-0.38 -0.46 -0.32 -0.38 -1.17 -0.74 -0.49 0.38 -0.77 -0.69 -1.24 -1.17 -1.36 -1.06 -0.51 -0.82 0.07 -0.96 0.05 -1.6 -0.76 -0.16 -2.11 2.21 -0.45 0.24 0.63 -2.24 -0.1 1.68 1.94 0.48 -0.98 0.19 -0.51
-0.74 -1.01 -1.27 -1.01 -1.6 -0.5 -0.59 -0.02 -0.7 -0.66 -1.82 -1.57 -1.22 -1.05 -0.7 -0.99 -2.2 0.11 0.44 -1.82 0.27 -0.01 -1.1 1.6 0.39 -0.87 0.41 -1.34 -0.43 1.8 2.55 0.11 -1.64 0.51 0.33
-0.79 -0.45 -0.82 -0.64 -1.3 -0.06 -0.5 0.19 -0.37 -0.49 -1.76 -1.37 0.18 -1.56 -0.62 -0.69 -1.83 -0.03 0.66 -0.84 -0.32 -0.5 -0.81 1.17 0.53 0.35 0.94 -0.66 -0.16 1.67 1.83 0.74 -1.36 -0.34 -0.19
-0.34 0.33 -0.17 0.17 -0.49 -0.04 0.32 -0.37 -0.03 0.09 -1.39 -0.93 -0.14 0.25 -0.4 -0.88 0.54 0.19 0.31 -0.16 -1.22 -0.66 -1.67 0.86 -0.5 -0.78 -0.91 -0.58 -0.49 1.38 1.18 1.06 -0.99 -0.11 0.46
-0.45 -0.39 -0.51 -0.28 -0.5 -0.27 -0.27 -0.32 -0.14 -0.15 -1.04 -0.8 0.03 -0.7 -0.06 -0.42 -1.24 -0.16 -0.32 0.01 0.26 -0.19 0.15 0.67 0.77 -0.21 1.17 -0.34 0.6 0.71 1.44 -0.6 -0.73 0.04 -0.1
0.01 -0.99 -0.63 -1.43 -0.29 -0.22 -1.3 -0.49 -0.58 -0.48 -0.18 -0.13 -0.16 -1.6 -0.16 -1.27 -0.28 -0.86 -0.64 -0.57 -1.11 -0.41 -1.4 1.75 -0.17 -1.09 -0.09 -0.96 -0.27 1.46 1.33 1.1 0.04 1.13 1.04
-1.51 -1.82 -2.05 -2.06 -2.14 -0.91 -1.73 -1.19 -1.24 -1.05 -1.72 -2.45 1.52 -3.36 -1.12 -2.17 -0.89 -0.62 -0.66 -0.88 -0.57 -1.09 -1.52 1.84 0.86 0.07 -0.33 -0.99 -2.97 2.47 2.42 1.93 -2.18 -1.59 -1.58
-0.01 0.31 -0.07 0.11 -0.24 0.17 0.14 -0.5 0.23 0.16 -1.19 -0.7 -0.53 -1.34 -0.91 -1.21 -1.65 0.22 -0.09 0.1 -0.36 0.01 -0.34 0.67 0.77 0.24 -0.05 -0.45 -0.36 1.07 0.96 1.02 -0.8 0.39 -0.79
-1.99 -2.03 -2.47 -2.61 -1.75 -1.85 -1.53 -0.96 -1.98 -2.15 -1.46 -1.49 -1.36 -3.38 -2.31 -4.44 -2.09 0.95 0.22 -0.49 0.58 0.39 -0.86 0.21 -1.19 -2.0 -3.26 -2.22 -1.69 3.17 -0.5 3.38 -1.56 -1.7 -2.53
-4.57 -4.25 -4.29 -4.52 -2.29 -3.94 -5.18 -0.41 -4.45 -4.86 -4.35 -4.31 -1.09 -4.54 -1.84 -3.36 -2.14 -2.84 -2.15 0.04 -1.36 -1.38 -4.59 1.41 1.98 2.24 2.78 -4.73 0.27 1.81 2.48 -0.93 -4.33 -1.37 -0.43
-0.24 0.39 -0.12 0.12 -0.65 0.23 0.23 0.17 -0.26 -0.06 -1.9 -1.25 0.53 -0.92 -1.08 -1.62 -2.18 0.22 0.22 -0.47 -0.58 -0.39 -1.1 0.84 0.23 0.12 0.32 -1.31 -1.03 1.6 1.4 1.36 -1.41 0.05 -1.09
-1.54 -1.53 -1.39 -1.48 -1.08 -0.35 -1.26 0.03 -0.34 -0.73 -2.25 -1.93 -0.71 -1.36 -0.93 -0.55 -2.19 -0.6 0.03 -0.08 -0.19 -0.36 -0.96 0.72 0.49 1.14 2.75 -2.03 0.71 1.2 1.8 -0.85 -1.93 -0.76 -0.5
-0.26 0.67 -0.06 0.37 -0.91 0.28 0.44 0.27 -0.14 0.03 -1.6 -1.11 0.17 -2.31 0.5 -0.49 0.75 0.32 0.48 -0.54 -1.19 -0.52 -1.68 0.36 -0.71 0.28 -0.26 -0.89 -0.84 1.18 1.14 0.66 -1.12 0.46 -1.14
-1.4 -0.89 -1.72 -1.08 -1.09 -0.91 -0.79 -0.87 -1.05 -1.08 -1.3 -1.1 0.48 -1.17 -2.0 -2.0 -2.57 -0.81 -0.86 0.42 0.17 -0.57 -0.33 1.13 0.59 0.75 2.07 -0.68 -0.73 1.8 1.99 0.59 -1.29 -0.34 -0.3
0.64 1.63 0.55 1.22 0.58 1.16 0.67 -0.92 0.48 1.5 -0.23 -0.19 0.4 -2.39 -1.35 -16.08 -2.37 - - -5.96 -7.39 - - -4.63 -2.54 - -2.92 -0.33 -14.65 1.72 0.54 2.27 -0.15 -0.68 -1.37
0.46 -0.38 -0.4 -0.98 -0.54 0.43 -0.78 -0.48 -0.2 -0.52 0.01 0.17 -1.9 -1.95 0.09 -0.99 -0.19 -0.58 -0.1 -1.8 -1.09 -0.07 -2.19 1.03 -0.53 0.05 0.07 -0.19 -1.44 1.67 1.76 0.52 0.39 0.76 -0.04
-0.81 -0.99 -0.64 -0.94 -0.5 -0.36 -1.31 0.53 -0.16 -0.79 0.82 -0.01 -2.16 -2.05 -0.78 -0.26 -0.2 -1.22 -0.8 -1.24 -2.79 -0.68 -2.0 0.59 -1.54 1.47 2.31 -2.28 -0.9 1.3 1.64 -1.14 -0.58 0.83 0.28
0.81 0.1 0.12 -0.36 0.01 0.39 -0.24 -0.45 0.16 0.02 0.01 -0.07 0.3 -1.64 -0.1 -0.91 -1.21 0.76 0.42 -1.29 -0.2 0.1 -0.62 -0.01 -0.08 -0.07 0.06 0.16 -0.56 0.71 0.55 0.38 -0.77 0.96 -2.46
-1.65 -2.37 -2.62 -2.33 0.86 -1.5 -2.28 -2.35 - -2.33 - - - - -0.48 - -2.45 -0.78 - -2.37 -2.5 -3.75 - -0.52 -1.65 1.18 -0.13 -0.45 -2.71 4.29 -1.43 2.12 - -4.06 -
-0.3 0.38 -0.19 0.43 -0.91 -0.01 0.45 0.42 -0.23 -0.05 -0.47 -1.09 -0.18 -1.41 -1.22 -0.81 -0.84 0.44 0.28 -0.28 -3.57 -1.54 -2.95 0.02 -0.33 0.58 1.25 0.21 0.04 1.09 1.29 0.69 -1.17 -0.06 0.25
-0.52 -0.08 -0.52 -0.35 -0.39 -0.16 -0.37 -0.54 -0.45 -0.36 0.15 0.51 -1.17 1.02 -0.88 -1.86 -1.48 -0.52 -0.67 -0.98 0.74 0.85 -0.07 0.46 -0.51 -0.06 -0.23 -0.92 -1.45 1.36 1.36 0.56 0.27 0.65 -0.63
-3.07 0.09 -1.62 0.38 -0.62 -0.03 0.99 -0.34 0.42 0.59 -1.9 -1.51 0.85 -1.53 -0.37 -0.54 1.04 1.29 0.4 1.47 -0.06 -0.37 -0.47 1.01 -0.55 -1.63 -3.95 -0.06 -0.96 0.56 0.45 -0.33 -1.58 -0.97 -0.68
- - - - 0.83 - -1.69 - - - -2.94 -3.25 0.8 - - - - -3.7 -3.23 -2.13 -3.54 - 2.24 - - -0.79 0.18 - - 3.59 3.04 1.6 -1.48 -2.72 -2.3
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.