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  5. PTI_24G01870.1

PTI_24G01870.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000066 (OrthoFinder) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_24G01870.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
PTI_00G00190.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_00G02190.1 No alias Hypothetical protein 0.1 OrthoFinder
PTI_00G02240.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.07 OrthoFinder
PTI_00G02470.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_00G04600.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_01G08060.1 No alias Hypothetical protein 0.12 OrthoFinder
PTI_01G11820.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
PTI_03G00510.1 No alias Hypothetical protein 0.12 OrthoFinder
PTI_03G05910.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_03G05920.1 No alias Hypothetical protein 0.11 OrthoFinder
PTI_03G05930.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_03G05970.1 No alias Hypothetical protein 0.11 OrthoFinder
PTI_05G04520.1 No alias Hypothetical protein 0.08 OrthoFinder
PTI_06G02350.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_06G03610.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
PTI_09G00400.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
PTI_09G02860.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
PTI_09G02870.1 No alias Hypothetical protein 0.08 OrthoFinder
PTI_10G01700.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_11G04470.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.1 OrthoFinder
PTI_15G00010.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
PTI_16G00090.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
PTI_16G00100.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_16G00110.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_17G02300.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_18G01250.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
PTI_18G02830.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_19G03110.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
PTI_20G00030.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_20G00040.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_20G00050.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_20G00060.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_22G02660.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_22G02670.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_23G02270.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.11 OrthoFinder
PTI_24G01650.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_27G00060.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
PTI_29G00070.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_31G00950.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
PTI_31G00960.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.09 OrthoFinder
PTI_33G00250.1 No alias Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 202 417
No external refs found!