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  5. PTI_24G00670.1

PTI_24G00670.1


Description : Helicase, C-terminal; CarD-like/TRCF domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001341 (OrthoFinder) Phylogenetic Tree(s): OG0001341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_24G00670.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cz03g15160.t1 No alias Helicase, C-terminal; Exonuclease, RNase T/DNA... 0.01 OrthoFinder
OT_05G01350.1 No alias CarD-like/TRCF domain; Helicase, C-terminal; DEAD/DEAH... 0.07 OrthoFinder
SymbC1.scaffold2.164 2.164 Transcription-repair-coupling factor, C-terminal domain;... 0.01 OrthoFinder
TP23G00230.1 No alias CarD-like/TRCF domain; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Vocar.0045s0043.1 32887754 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497060.1_789 KAA8497060 Transcription-repair-coupling factor 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR003711 CarD-like/TRCF_domain 267 410
IPR001650 Helicase_C 649 751
IPR011545 DEAD/DEAH_box_helicase_dom 443 608
No external refs found!