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  5. PTI_23G00340.1

PTI_23G00340.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0003296 (OrthoFinder) Phylogenetic Tree(s): OG0003296_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_23G00340.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.75 tig00000144_g9066.t1 No description available 0.12 OrthoFinder
Cre02.g104650 30785421 No description available 0.24 OrthoFinder
Cz10g04070.t1 No alias RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
OT_10G02900.1 No alias RNA recognition motif domain [Interproscan]. 0.07 OrthoFinder
Sro251_g099260.1 Contig687.g8006 RNA-binding protein 28 0.2 OrthoFinder
Transcript_contig_57849 57849 RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
Transcript_contig_58008 58008 RNA recognition motif domain [Interproscan]. 0.08 OrthoFinder
Vocar.0020s0164.1 32886730 RNA recognition motif domain [Interproscan]. 0.08 OrthoFinder
XM_002503386.1 MICPUN_101277, 101277 RNA recognition motif domain [Interproscan]. 0.18 OrthoFinder
XM_003055646.1 MicpuC2_1653, 1653 RNA recognition motif domain [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07148.1_1625 HaLaN_01909, GFH07148 Hypothetical protein 0.05 OrthoFinder
lcl|BLLF01000077.1_cds_GFH07149.1_1626 HaLaN_01910, GFH07149 RNA recognition motif domain [Interproscan]. 0.12 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57348.1_8998 PRW57348 RNA-binding 28 isoform B 0.21 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57349.1_8999 PRW57349 RNA-binding 28 isoform A 0.21 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493286.1_9587 KAA8493286 RNA-binding protein 28 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 386 444
IPR000504 RRM_dom 652 680
No external refs found!