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  5. PTI_21G00840.1

PTI_21G00840.1


Description : Snf7 family [Interproscan].


Gene families : OG_01_0000736 (OrthoFinder) Phylogenetic Tree(s): OG0000736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_21G00840.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020510.41 tig00020510_g9823.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 OrthoFinder
Cpa|evm.model.tig00020830.6 tig00020830_g14387.t1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder
Cre04.g213450 30791227, VPS2A Vesicle trafficking.endomembrane trafficking.ESCRT... 0.07 OrthoFinder
Cre17.g735400 30782779, VPS2B Vesicle trafficking.endomembrane trafficking.ESCRT... 0.06 OrthoFinder
EOD26134 No alias Vacuolar protein sorting protein 2A [Ensembl]. 0.01 OrthoFinder
Sro1334_g263820.1 Contig785.g8786 Charged multivesicular body protein 0.02 OrthoFinder
XM_002505408.1 MICPUN_95710, 95710 Snf7 family [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498509.1_7462 KAA8498509 Charged multivesicular body protein 2b 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497264.1_993 KAA8497264 Charged multivesicular body protein 2a-like 2 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0016567 protein ubiquitination IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Enrichment
BP GO:0032446 protein modification by small protein conjugation IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
InterPro domains Description Start Stop
IPR005024 Snf7_fam 20 185
No external refs found!