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  5. PTI_21G00720.1

PTI_21G00720.1


Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0002761 (OrthoFinder) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_21G00720.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020563.151 tig00020563_g11353.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
Cre08.g385200 30773598 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder
Dusal.0122s00015.1 33203032 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD21539 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.04 OrthoFinder
EOD22134 No alias Small nuclear ribonucleo protein [Ensembl]. 0.04 OrthoFinder
OT_14G01220.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro194_g083010.1 Contig237.g2896 Small nuclear ribonucleoprotein E 0.02 OrthoFinder
Sro194_g083060.1 Contig237.g2901 Small nuclear ribonucleoprotein E 0.02 OrthoFinder
XM_003063655.1 MicpuC2_53609, 53609 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0030008 TRAPP complex IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 20 84
No external refs found!