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  5. PTI_20G02850.1

PTI_20G02850.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000435 (OrthoFinder) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G02850.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
PTI_01G00030.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_01G10570.1 No alias Hypothetical protein 0.07 OrthoFinder
PTI_04G04200.1 No alias Hypothetical protein 0.08 OrthoFinder
PTI_04G04210.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_06G03640.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_12G02250.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_13G02370.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_15G03660.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_24G01670.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_25G01040.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_26G00280.1 No alias Hypothetical protein 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 793 914
No external refs found!