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  5. PTI_20G02670.1

PTI_20G02670.1


Description : RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 7; RNA polymerase II, heptapeptide repeat, eukaryotic; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit [Interproscan].


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G02670.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cz03g13040.t1 No alias RNA polymerase II, heptapeptide repeat, eukaryotic; RNA... 0.04 OrthoFinder
Dusal.0197s00003.1 33188524 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.02 OrthoFinder
lcl|BLLF01000232.1_cds_GFH09408.1_3885 HaLaN_04538, GFH09408 DNA-directed RNA polymerase subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000684 RNA_pol_II_repeat_euk 1659 1672
IPR000684 RNA_pol_II_repeat_euk 1715 1728
IPR000684 RNA_pol_II_repeat_euk 1673 1686
IPR000684 RNA_pol_II_repeat_euk 1603 1616
IPR000684 RNA_pol_II_repeat_euk 1578 1588
IPR000684 RNA_pol_II_repeat_euk 1743 1756
IPR000684 RNA_pol_II_repeat_euk 1750 1759
IPR000684 RNA_pol_II_repeat_euk 1680 1693
IPR000684 RNA_pol_II_repeat_euk 1645 1658
IPR000684 RNA_pol_II_repeat_euk 1736 1749
IPR000684 RNA_pol_II_repeat_euk 1687 1700
IPR000684 RNA_pol_II_repeat_euk 1631 1644
IPR000684 RNA_pol_II_repeat_euk 1694 1707
IPR000684 RNA_pol_II_repeat_euk 1708 1721
IPR000684 RNA_pol_II_repeat_euk 1722 1735
IPR000684 RNA_pol_II_repeat_euk 1589 1602
IPR000684 RNA_pol_II_repeat_euk 1729 1742
IPR000684 RNA_pol_II_repeat_euk 1617 1630
IPR000684 RNA_pol_II_repeat_euk 1701 1714
IPR000722 RNA_pol_asu 342 506
IPR007073 RNA_pol_Rpb1_7 1162 1308
IPR007075 RNA_pol_Rpb1_6 883 1075
IPR007080 RNA_pol_Rpb1_1 26 340
IPR007066 RNA_pol_Rpb1_3 511 678
IPR007083 RNA_pol_Rpb1_4 710 810
IPR007081 RNA_pol_Rpb1_5 817 1430
No external refs found!