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  5. PTI_20G01910.1

PTI_20G01910.1


Description : DNA primase, small subunit [Interproscan].


Gene families : OG_01_0004094 (OrthoFinder) Phylogenetic Tree(s): OG0004094_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G01910.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000342.9 tig00000342_g24197.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder
Cre07.g312350 30774946 Cell cycle.interphase.DNA replication.elongation.DNA... 0.04 OrthoFinder
Cz01g42030.t1 No alias DNA primase, small subunit [Interproscan]. 0.04 OrthoFinder
EOD28673 No alias DNA primase, small subunit [Interproscan]. 0.05 OrthoFinder
EOD35466 No alias DNA primase, small subunit [Interproscan]. 0.03 OrthoFinder
TP01G07670.1 No alias DNA primase, small subunit [Interproscan]. 0.03 OrthoFinder
Vocar.0003s0030.1 32888937 DNA primase, small subunit [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001226.1_cds_GFH17945.1_12422 HaLaN_14670, GFH17945 DNA primase 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60992.1_147 PRW60992 DNA primase small subunit 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499638.1_8591 KAA8499638 DNA primase small subunit 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEA Interproscan
BP GO:0006269 DNA replication, synthesis of RNA primer IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR002755 DNA_primase_S 144 387
No external refs found!