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  5. PTI_20G00110.1

PTI_20G00110.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000435 (OrthoFinder) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_20G00110.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
PTI_01G10570.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_04G04200.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_04G04210.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_06G03640.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
PTI_11G04460.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_12G02130.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_13G04040.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
PTI_24G01670.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_31G00970.1 No alias Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 780 899
No external refs found!