1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_19G01540.1

PTI_19G01540.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000435 (OrthoFinder) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_19G01540.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
PTI_01G10570.1 No alias Hypothetical protein 0.04 OrthoFinder
PTI_04G04200.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_06G03640.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
PTI_11G04460.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_12G02130.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_13G00190.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_24G01590.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_24G01670.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_31G00970.1 No alias Hypothetical protein 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 824 944
No external refs found!