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  5. PTI_17G03020.1

PTI_17G03020.1


Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000435 (OrthoFinder) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_17G03020.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
PTI_01G01430.1 No alias Hypothetical protein 0.03 OrthoFinder
PTI_01G10570.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_04G04200.1 No alias Hypothetical protein 0.09 OrthoFinder
PTI_04G04210.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_06G03640.1 No alias Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
PTI_11G04460.1 No alias Hypothetical protein 0.09 OrthoFinder
PTI_12G02130.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_13G00190.1 No alias Hypothetical protein 0.09 OrthoFinder
PTI_15G03660.1 No alias Hypothetical protein 0.05 OrthoFinder
PTI_24G01670.1 No alias Hypothetical protein 0.06 OrthoFinder
PTI_31G00970.1 No alias Hypothetical protein 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0031464 Cul4A-RING E3 ubiquitin ligase complex IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 797 918
No external refs found!