1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_17G02630.1

PTI_17G02630.1


Description : Regulator of chromosome condensation, RCC1; BTB/POZ domain [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_17G02630.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021178.12 tig00021178_g19202.t2 No description available 0.01 OrthoFinder
Cz09g14190.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Cz09g20160.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Dusal.1192s00003.1 33203438 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
EOD23616 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
EOD28341 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
OT_10G01050.1 No alias Brevis radix (BRX) domain; Regulator of chromosome... 0.02 OrthoFinder
Sro2476_g328790.1 Contig1473.g13496 RCC1 and BTB domain-containing protein 2 0.02 OrthoFinder
lcl|BLLF01000535.1_cds_GFH12745.1_7222 HaLaN_08488, GFH12745 UV-resistance 8 protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
MF GO:0042393 histone binding IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 54 100
IPR000408 Reg_chr_condens 103 152
IPR000408 Reg_chr_condens 155 203
IPR000408 Reg_chr_condens 312 361
IPR000408 Reg_chr_condens 364 413
IPR000408 Reg_chr_condens 261 309
IPR000408 Reg_chr_condens 207 256
IPR000210 BTB/POZ_dom 440 542
No external refs found!