1. Home
  2. Species
  3. Phaeodactylum tricornutum
  4. Sequence
  5. PTI_17G01580.1

PTI_17G01580.1


Description : ClpA/ClpB, AAA lid domain; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_17G01580.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cre02.g090850 30785159, CLPB3 External stimuli response.temperature.Hsp... 0.02 OrthoFinder
Cre11.g467575 30775868 External stimuli response.temperature.Hsp... 0.02 OrthoFinder
Cre11.g467644 30775633, CLPB1 External stimuli response.temperature.Hsp... 0.01 OrthoFinder
Sro1170_g248780.1 Contig3531.g27307 Protein ClpB 0.02 OrthoFinder
Sro1577_g283580.1 Contig4524.g33888 Protein ClpB 0.03 OrthoFinder
Sro727_g193640.1 Contig1496.g13669 Protein ClpB 0.05 OrthoFinder
SymbC1.scaffold9.28 9.28 Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.01 OrthoFinder
TP09G00210.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.04 OrthoFinder
TP22G00720.1 No alias ATPase, AAA-type, core; Clp ATPase, C-terminal;... 0.04 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57345.1_8975 PRW57345 ATP-dependent Clp protease ATP-binding subunit 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491801.1_4809 KAA8491801 Chaperone protein ClpB 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003756 protein disulfide isomerase activity IEP Enrichment
MF GO:0004650 polygalacturonase activity IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0016559 peroxisome fission IEP Enrichment
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0048285 organelle fission IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 205 339
IPR041546 ClpA/ClpB_AAA_lid 346 445
IPR003959 ATPase_AAA_core 605 769
IPR004176 Clp_R_dom 19 52
IPR004176 Clp_R_dom 99 147
IPR019489 Clp_ATPase_C 777 857
No external refs found!