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  5. PTI_16G02670.1

PTI_16G02670.1


Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000325 (OrthoFinder) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: PTI_16G02670.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Sro9_g007630.1 Contig4120.g31531 Lactococcin-G-processing and transport ATP-binding protein LagD 0.01 OrthoFinder
TP09G03270.1 No alias ABC transporter-like; ABC transporter type 1,... 0.05 OrthoFinder
Transcript_contig_56194 56194 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Transcript_contig_67533 67533 ABC transporter-like [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000870.1_cds_GFH15578.1_10055 HaLaN_11827, GFH15578 Mitochondrial half-size ABC transporter, membrane protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60015.1_6238 PRW60015 ATP-binding cassette sub-family B member mitochondrial 0.03 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05775.1_6063 PRW05775 Metal ABC transporter permease isoform A 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499548.1_8501 KAA8499548 ATP-binding cassette sub-family B member 6, mitochondrial 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
CC GO:0008303 caspase complex IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
MF GO:0009976 tocopherol cyclase activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
CC GO:0042765 GPI-anchor transamidase complex IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0045048 protein insertion into ER membrane IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051205 protein insertion into membrane IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 52 344
IPR003439 ABC_transporter-like_ATP-bd 412 561
No external refs found!